#input text file with the voxellized phantom information
/det/programPath /home/paterno/geant4-apps/mammo-build
/patient/imageNameAndPath input_compressed.txt
#/det/scorePhantomDoseDistrib true			#it works only with voxel phantoms (setPhantomType>4), default is false.
                                            #Scorer Voxellization is the same of phantom's one, cannot be changed.

/det/setPhantom true
/det/setPhantomType 5						#1->omogeneus semicylinder, 2->semicylinder with inner spheres
											#3->omogeneus semisphere, 4->semicylinder with inner spheres
                                            #5->compressed voxel phantom (DM,DBT), 6-> voxel phantom (BCT)  
/det/setPhantomZ 0.5 m   
#/det/setPhantomRotAngleDeg 45

#/det/setThorax false                       #default is true 

#/det/setPaddle false                       #default is true 
/det/setDSGdistance 1. cm                   #distance of detector from paddle/phantom

/det/setGrid false                          #default is true                        

/det/setSystemXsize 25. cm				    #set the tranversal size of paddle, support and grid
/det/setSystemYsize 15. cm                  #defualt 20 x 10 cm2

/det/setDetectorMaterial 2					#see the list (0->CsI)
/det/setDetectorSize 250. mm
/det/setDetectorThickness 0.2 mm
/det/setDetectorZ 0.5372 m                  #in case of Grid and/or Paddle, it is automatically calculated
#/det/setDetectorRotAngleDeg 5

/det/setSD false							#the volume is positioned anyway (default true)

/det/setVoxelization false					#activate the voxelization of the Detector (defualt false)
/det/setColumns 833
/det/setRows 833
/det/setSlices 1

#/det/setBuiltinScorer true                 #default is false (Dose scorer -> does not work if I kill electrons)
#/det/setScoringIndex 4						#0->No (default), 1->phantom, 2->detail, 3->skin, 4->detector, 5->spheres

#/det/setMode 0								#0->gen (score and kill), 1->gen and track (default)

#/phys/SelectPhysicsList penelopeMI         #standard, livermore, penelope, LowEP, standard_option4 (default)
                                            #penelopeMI, penelopeMI_PE, penelopeMI_scatt
/run/setCut 0.1 mm

/process/em/fluo false
/process/em/auger false
/process/em/pixe false
/process/em/UseGeneralProcess false         #otherwise biasing and process tagging do not work properly

/random/setSeeds 19577793 424238335
/run/verbose 1                              #to see the Couples CutsVsRegion
/control/verbose 1                          #to see the macro that we are using in the log 	 		

/run/initialize

/mystack/Kill e-	                        
#/sd/setSK true								#if setSD is false, this must be commented (default false)

/run/setfilenamesave output/output.root

#/control/execute input/beam_test.mac   
#/gun/setPrimariesPerEvent 10
/control/execute input/beam_test.mac
/gun/setPrimariesPerEvent 96

/run/printProgress 10000
/run/beamOn 100000	


#materials for the Phantom:
#1->Water (default), 2->MedMat, 3->PMMA, 4->Lexan, 5->Kapton, 6->Nylon, 7->Polyethylene, 
#8->Polystyrene, 9->CIRS3070, 10->CIRS5050, 11->CIRS7030, 12->RMI454, 13->SoftTissueICRU44, 
#14->Adipose, 15->Glaundular, 16->CustomMat, 17->Air

#materials for the Detail:
#0->phantom (defualt), 1->I solution, 2->Gd solution, 3->MedMat, 4->Al, 5->cu

#materials (models) for the Skin:
#1->Adipose (5 mm), 2->G4_SKIN_ICRP (4 mm), 3->G4_SKIN_ICRP (1.45 mm)
#4->1.45 mm G4_SKIN_ICRP + 2 mm Adipose, 5->1.45 mm G4_SKIN_ICRP + 3.55 mm Adipose 
#6->Adipose (5 mm), 0->PhantomMaterial (default)

#materials for the Spheres:
#1->Water, 2->MedMat, 3->PMMA, 4->Lexan, 5->Kapton, 6->Nylon, 7->Polyethylene, 8->Polystyrene
#9->Adipose, 10->Glaundular (defualt)

#materials for the Detector:
#1->Ge, 2->Se, 3->Si, 4->GOS, otherwise->CsI